Scaffold Ga0208814_1000716

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000716
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18033
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (95.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035970	Metagenome / Metatranscriptome	171	Y
F055213	Metagenome	139	Y
F064107	Metagenome / Metatranscriptome	129	Y
F079210	Metagenome / Metatranscriptome	116	N
F090864	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100071612	F064107	N/A	MSNQIKLKIEISDDLLDRLLTVMAITSQQNALQGAMPMLMGAMGGQGAPPPKDEEKPSMGFNMDKK
Ga0208814_100071622	F055213	AGGAG	MPTHGMKTPQVGDLFVSETQGRMHILISYEFIFKDRIDLYRCYKAKLKRLDDGAITSWTKPQHEFYKKYRPLRPNPQA
Ga0208814_100071626	F090864	GAG	MVHLVNHDKIGTGYALQETDGRWVVRFHHNYNKHFVFTKSAFKQGYLKDCGIVKLGEDNG
Ga0208814_100071627	F035970	GGAG	MDNNWNIIMKTAKELAQEYHKEGWTGDCNDFTQASSSVSQELTNLEVERLWDEFGGEELISDNVTFTFHRQGRDKVITVNLCPKK
Ga0208814_10007166	F079210	GGAG	MKISKGDMVGFKFKGDYHLAIVIDDLGQGYPYGRYTGLLIGSDGDYIPLNETELTLLSTKTQVDGWERQKKLQKLLDKKKQTS