NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1000716

Scaffold Ga0208814_1000716


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1000716 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18033
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (95.65%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035970Metagenome / Metatranscriptome171Y
F055213Metagenome139Y
F064107Metagenome / Metatranscriptome129Y
F079210Metagenome / Metatranscriptome116N
F090864Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100071612F064107N/AMSNQIKLKIEISDDLLDRLLTVMAITSQQNALQGAMPMLMGAMGGQGAPPPKDEEKPSMGFNMDKK
Ga0208814_100071622F055213AGGAGMPTHGMKTPQVGDLFVSETQGRMHILISYEFIFKDRIDLYRCYKAKLKRLDDGAITSWTKPQHEFYKKYRPLRPNPQA
Ga0208814_100071626F090864GAGMVHLVNHDKIGTGYALQETDGRWVVRFHHNYNKHFVFTKSAFKQGYLKDCGIVKLGEDNG
Ga0208814_100071627F035970GGAGMDNNWNIIMKTAKELAQEYHKEGWTGDCNDFTQASSSVSQELTNLEVERLWDEFGGEELISDNVTFTFHRQGRDKVITVNLCPKK
Ga0208814_10007166F079210GGAGMKISKGDMVGFKFKGDYHLAIVIDDLGQGYPYGRYTGLLIGSDGDYIPLNETELTLLSTKTQVDGWERQKKLQKLLDKKKQTS

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