Scaffold Ga0208814_1000617

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000617
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19998
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009033	Metagenome / Metatranscriptome	324	Y
F029568	Metagenome / Metatranscriptome	188	Y
F084742	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100061711	F029568	N/A	MGYRYDLTNTHVEIYYKSTPEFEKARNLCLKEENWLRNNYTKDNLKVEEHTGYGVLYQTSTGKPMVMGGVFNDSRYPPNVAKQINRLYTFPDFRMTATDMTDGFRCTCKLIDALEEVNTYEVYLITMQNRPARPNRGFWKVWCKHMDIASEGAWALGTNGYIQTCPWPVQKCWQNFVWKETKQGAFDNWAPETITHAEWSELEEGK
Ga0208814_100061715	F084742	AGAAG	VPKNKLPPEVIKHWPEIFGDVEIKAVPIEYIHNIHVHFHDGKIWEIDLDKQASVGDGDVNIIENSLETFLEKYHDDISHVDFRLNTSKVVEDVKKRTKSFMKKRK
Ga0208814_10006173	F009033	N/A	MNIYLDQKWNRIGISLSGGADSALLAYLICKNVSTTTDIHITNQIRMWKTRPWQGYVADGVINWLKQEFNNKFYIHKNLIPPELEEPTDYFIKDEYGKMKSGNRIILRSHNEYIAHQYNLDALYGGVNMNPDIDIPGQLDERNEGTLVPHFVHNGVDICHPFVYTKKDWIIQQFYKNNIIDLLNLTRSCEGEFKGLDYTTYTPGQDVPICGECFWCKERQWGIDNA