Scaffold Ga0208814_1000548

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000548
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22385
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F023848	Metagenome	208	Y
F051963	Metagenome / Metatranscriptome	143	N
F078735	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100054814	F078735	N/A	MKSMKMNSIMQIDGIGKRYGLLPSQVIKDADTFDLYIMDAAMSFEHYHNKKQIDGKAPIPDYTDDELLEIMGK
Ga0208814_100054816	F003807	AGGA	MTNSHDVWLKTDEDKLRSLISDEAKMMPMLDNMLATVRQLKAKQAFRLALLNQLLEDLGENGLTK
Ga0208814_100054818	F051963	AGGAG	VALSNLPLVDKAKVVTYLKTVAKIQAPIIEVSSTFPSEDDNIAYGLYVDDVTDNGRSINQLGVQSCASMYNAEDQFNILYISFQGDPQAPVILNSINDLAANVNFFDGYTSVEFDRDVTIGQRSEIHNYTFTLTRLEFNNAYQS
Ga0208814_100054819	F002260	AGGA	MSVPFQRISNATVADIIFYDPSAERRASQMQIDWDTYFNVGSQEILYTLEFGWWPAYCDTVMGATLYSNLPNGQMISAFNPNLLIKNDQTLIRLDTFMATKIFYESIVSDTSNVNSVDAANYGHALERYEREWEKALQLMNFYDLNQDAPDGPTTKLEENWTADPDYFNNNRRWF
Ga0208814_100054825	F023848	N/A	MPKANKIDISLYGEQSTIMHDWLESNKHCIDIVPVGSGKTFLAAVALPLFASDERYHKGKDIIYSAPTGSMIKSLIWEPLKQSCMENFGLRDGKDINNSELTIKFPNGVFIRCKSAEMKENLRGLNVGMWVADEASLYSQETLQEITNRLRPRVGSPDTQGRLIVISTPNGNGPLFDLFTLAQNNPDKYIVRHLNYKQMRSGNLDFIEEQKRIISPLKFEQDYMCSWESVTDQFFYTFNRAVHSRDVFDRLGDVYTFHDFNKKVMCAVVAQVTKPNSNDGTMEILKSYAIKDCGTEQLAQQIREDYPRRRIYSVIDMTGAQTNRDTTSTFGVTDRIILEKYGFTIINSKRVNPLISDTDNSSNAFINRGGLTVSPYDVQLIEALQSYHFTDGTRKKLTKYTDAKYSHIDGLGDSIRYGIHHLFPIQHDSWAGAEYLGSDARMQAYNRPGIEHEPYSPLYKGGPTWEDIMGKRDNESDHVI