Scaffold Ga0208814_1000392

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000392
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28874
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F073753	Metagenome	120	Y
F095495	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100039225	F095495	AGGAG	MSRCKACDTIMTESELKRTDYNTDKPLDLCYNCMSISTSAALSFEGASLGWQDNEESLDLESLGFDKSNN
Ga0208814_100039226	F019141	GAGG	MSKIKAQLIGYGGNDWIGDDDHVKVSEVTAYLMYTMSVSEMQQAAARHIQHDLYTMARSDFEKVHYDTIGVHIK
Ga0208814_100039239	F073753	AGGCGG	MTDLINKLSKIDQRNVKMAIIHATNGNYRAIDSMVRGANKRSVATLTAIRAAL