Scaffold Ga0208814_1000349

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000349
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30755
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026881	Metagenome / Metatranscriptome	196	Y
F046384	Metagenome	151	Y
F055737	Metagenome	138	Y
F056147	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100034925	F055737	N/A	LVKETRKAISWCFKNNIKIIIKPLSKTGKPNAVIEIHREGSIQTGKEVYRQDKKLHNKIEELYLYLHKTLR
Ga0208814_100034937	F026881	N/A	MKRKEFTTKERFKVLEKTVAILYVAIEKLNKRADVVDQFLTKATKDYKDE
Ga0208814_100034945	F046384	N/A	MITDLHSFKNMQIDTLQKEVAKANKKILNLETFIFELCEEDCPVAYKDIVKKEILNG
Ga0208814_100034949	F056147	N/A	MNIEVNITRNEDQSEYYQLRLSTYKESIEGKFTKEDLRYLIQQIDNEIV