Scaffold Ga0208814

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1000328 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025276 Open in IMG/M

Scaffold ID

Ga0208814_1000328 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31933
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (20.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31933

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (20.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008497	Metagenome / Metatranscriptome	332	Y
F023594	Metagenome	209	Y
F026402	Metagenome / Metatranscriptome	198	Y
F029110	Metagenome / Metatranscriptome	189	N
F031873	Metagenome	181	N
F045103	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100032816	F031873	GGA	MTKKEYEVLDRWADRYDVIYTPTESKVSFWDFTYELNDIKYYCEMKQRNFTLDYAVQNYTDGLLLEMHKYERILRRTKNEKGSQGLYFNFFNDDKALVFNLNKLKIDKWQWKTMPESTEFSRRRFVHKYVTFIDYSKGKLFYI
Ga0208814_100032817	F029110	N/A	MNEEIAKLLEQNASNVCNSGTKSRLDIGGDKEVAKAWKLIQKEIKRINPKFYEIIKDR
Ga0208814_10003282	F023594	N/A	MLYQVKQTRKEKYFFNLLEREMMNSYSFDNYSEALLFCLSEEIKQFDCIVSDKVKTSRKTYENYYTLKQFIKAATINPMWYLGTQSVKVNLENYYFYLIGSGKLTKLKKH
Ga0208814_100032825	F008497	N/A	MRGNVFLCLDNTTFNKLIPNELVGTYGIPEYDEEGIQNGVTHPTFKELGEYNRRKFGHNPMVKIGKAKFYIIQLEASWLNGELSSLLNLGKNKAYPKNCLMTRSEASTFLSEHQSEEV
Ga0208814_100032835	F026402	AGGA	MFQEIGKEIVTKLNNTATFTAANGSNKVFPVIIPQGVNYPSTTFEITNVSNFMSKNNSLNSCDVSIRIACFADGYEVTYNQAKAVVEALDLFEVTYTESGVSYVAKFRFETLDDEYFKSAEVFYKNVIFNCLIIKQ
Ga0208814_100032842	F045103	AGGTGG	MIAKRFSLSKEEIITSNQGSIRAICSSVLSNNNDIHLLDDLIQDINLILLTQMDETIESLHETNQFEYFVARVVTNQVISTSSPFHNTYRLREPKNHLKSDNYDILPDLLWYNLSNLKHKGMRDVMYLRFEYGLKIQEISLIKGYSPSYIHRLIGLSYKLIKNSSKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208814_1000328

Overview

Ecosystem & Geography

Associated Families

Sequences