Scaffold Ga0208814

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1000310 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025276 Open in IMG/M

Scaffold ID

Ga0208814_1000310 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32696
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (10.34%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32696

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (10.34%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F027845	Metagenome / Metatranscriptome	193	Y
F037221	Metagenome / Metatranscriptome	168	Y
F039623	Metagenome / Metatranscriptome	163	N
F039638	Metagenome / Metatranscriptome	163	Y
F049629	Metagenome / Metatranscriptome	146	N
F103244	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100031012	F039638	N/A	MIIKQALELLAGDDWLIQDKDIQIAKGLYELPTTFAELKMNNKRKKLLK
Ga0208814_100031018	F039623	AGG	MELLDVDNTIKFRKFKCLTTNQVYEIIQTECTGRYLINAIDTLTRSDGLRKSFTRMELKKRFSNVEGIPEKDYLTKKKKKR
Ga0208814_100031019	F027845	AGAAG	MTQQEIIEAVKDIHAEVDHEGVDIVYNSGVYDIDVRFTSWDCLFTIEVYSKAEEVPLAILPKAMTTLFDYTVDLHTEYMRNISELRDTQDYLDIYYK
Ga0208814_100031020	F103244	N/A	MRVEDITSYENEKSKVTIFMESDTDGSYHFLKHIEEKGSDNEQIIRYSLPMFMAEYYMVEKFIKGNLVQDRKFFKQVMNLKANRNE
Ga0208814_100031021	F001728	N/A	MNKFELRPTDKKDHFRFFANGVDLVGEQEKSIFRHMVQVMDNGINTGL
Ga0208814_100031027	F037221	N/A	MTNWTTEELSNLKDVINHKVIYDGFEFVWMSRANNTWERHYVSNFKDYNKPMSWIHHHTYRWGKEYKQRQEEYLADMCKSLDVDVKIREISREAKVKTKQKVKEILNLKPNISSKEIAGILGVTKRAVDYHRIDD
Ga0208814_100031056	F049629	N/A	MIDLVDFKNAQIKALQESNAKQEARIAILETWIFELTDDKCPKDYKQVIRTEILKTN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208814_1000310

Overview

Ecosystem & Geography

Associated Families

Sequences