Scaffold Ga0208814_1000232

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000232
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38190
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (95.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002322	Metagenome / Metatranscriptome	571	Y
F002542	Metagenome / Metatranscriptome	550	Y
F015461	Metagenome / Metatranscriptome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100023215	F002542	AGGA	MHPTYLGFQIDWPVFIKQGFTGSGKIWKQGDHFNWLELGVDPAKVALMYDYGNLYHNVELEVQNKVGDRLSEMAGPQLATLVTLLNAEVKSRTSSGTEFDKKKCKKSTIDDKQRGLIRRFLNNSAWIMDHFYHVRDGILVE
Ga0208814_100023229	F002322	N/A	MLEKLPYSKLVEKAVLEMIQGGVPIRQIITSIQHLNDAPRSLSTLYKHYGPAMEAERTRISGAVGKRVIDQALYGDVQDGITWKSQELFLRSKGGWSPQATVNEVDQEIDPELDVSAADQLMNMLGFDIDEDPDEEENKAP
Ga0208814_100023235	F015461	AGGAG	MENVIKEIEAIMSDVKDVTARTGEYKRDIDRGINSTSDPELDTFPSKEAKIEEMLTYMLEAKDDMGRVQDSLKEIKDKLDTLLDVVEYEAIAQEIR