Scaffold Ga0208814_1000041

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000041
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100666
• Total Scaffold Genes: 149
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (23.49%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003188	Metagenome / Metatranscriptome	502	Y
F024316	Metagenome / Metatranscriptome	206	Y
F047638	Metagenome / Metatranscriptome	149	Y
F051049	Metagenome / Metatranscriptome	144	Y
F057295	Metagenome / Metatranscriptome	136	Y
F059880	Metagenome / Metatranscriptome	133	Y
F074832	Metagenome / Metatranscriptome	119	Y
F083269	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_1000041101	F057295	N/A	MVKLIFLDNEYYQLVREIKVEQVKGNMEGLKAWRDRLQCNHVLKYQGSYLMVRTVEDAEIIK
Ga0208814_1000041102	F059880	GAGG	MKKLHFENTDEFERVFKAKDEEVTDAMVEGIQEAFSFKKKSAELFEITFKDIELVYDITLPSTQWEIALETCMNHYRDLEQSDKAIDAYLLQKAIRLWLS
Ga0208814_1000041108	F051049	N/A	MTVVQSLDRLEVSYINHMEKYNGYRDAGYVWWERIKDCQKWCNKEKTYVPMSDTQTLMIMREWVKRQKSYDLV
Ga0208814_1000041112	F003188	N/A	MKSIKKNIREVLKARLDVSYRIKIKEPDREVMNKKIFVEVLDQLRKIEDRKDFLAEEIGMDMTHYEDQFFAVIDNLFKLAFNKSQLALIQMYIYKLVPDKEWDGMITIEENKKEKDVPFKLPDDVWDVIKKFEK
Ga0208814_100004133	F024316	N/A	MKLSKIILEGPLEYDPGFSREIDKIQDQGGKYIGSGDYGSVYLLNGKAVKVTTDEVEIEHAEILKGKKTNNFVYIYDVKKLDTKLGIITMEVMGEYKGEVPNEFIDALEKESTNLGIDPDELDLRPDNFMVHPKSGKLKMTDV
Ga0208814_100004164	F074832	N/A	MTKAEFLEGISFSLAGEYIKTTTYKYRGGRLPALEREYRMTTDPDNVLISDSIMNIEKIGTKKVHLYTFLLGKKISNKIRYDDMVEYISQEELV
Ga0208814_10000417	F047638	AGG	MKIKDLILEIEFSVYQAMVRIGHSEEVTVQDIGEMLRAMPGVLTVGQVSHNGDNNTAIMKVKLLTTKPASEAYASFKTTSLERIPEVKKVEVAEKTIEKKK
Ga0208814_100004190	F083269	AGGAGG	MSIKKVSVTKTSSYTVDGEGIVTRERIVELSHNWTEKDIILFKKIAKQGGVCRIKSIKYTVKPGEKITTSHGWADAGAGKMPGPE