Scaffold Ga0208814

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1000036 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025276 Open in IMG/M

Scaffold ID

Ga0208814_1000036 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	114829
Total Scaffold Genes	104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (10.58%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

114829

Total Scaffold Genes

104 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (10.58%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y
F055007	Metagenome / Metatranscriptome	139	Y
F063711	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100003610	F005243	N/A	MSNSKTNPELQNKDPQKEMSKKEMSERREEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMYMAQQYAAQKGEGVPDPNSKEGKDFQEAMSKAMSNETS
Ga0208814_100003612	F004866	GAG	MAIVSKVELKHQVDLNKSIKYQIVTYCFFNDTLISNSDLKFLTELSKMQGIELTKFCESAVAKGIFKSSQSARNAITKAEKKNLLVKKGHNKKTISLNPDINVQSEGLVLLDYKILGRETKES
Ga0208814_100003613	F006666	N/A	VKPKSHKDFKKGIADEVGVHPTVVDDFISFYYKKVRENLSNLSFPRINVEGIGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAKSEDIHINIVQMEKAMFQLEEDIRNKKKFKNVKNKVV
Ga0208814_100003624	F020206	N/A	MGLDIKLANKTYEFSNSSVSKIISSKSVGKDILVRDYANNAAAKAAGLVKGDLYHSTGDLKVVVE
Ga0208814_100003629	F055007	N/A	MANCAHCNKQFTCGCQKASLGNGVVVCKQCKIKADADLSTSSNLNRELARQQIQDLRNK
Ga0208814_100003633	F063711	AGTAG	MAGMEPGTTREYWENCLAEYELALEEEFNMQPGKGFNDDIIQLLKFEINECLKQLA
Ga0208814_100003685	F002047	N/A	MKQRISLPEAVAKDRDSLVKKGFLELKDGQYIMTAQALVICATLDSYFIKAKKKTDIQLMGKNFVEKINAYREIFPARKLPSGKPARNNVKALGEAFRWFFETYEYTWEDVIKASKMYVNEYRDADYLYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEEDHFKENVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208814_1000036

Overview

Ecosystem & Geography

Associated Families

Sequences