NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208183_1088536

Scaffold Ga0208183_1088536


Overview

Basic Information
Taxon OID3300025274 Open in IMG/M
Scaffold IDGa0208183_1088536 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)575
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.47Long. (o)11.53Alt. (m)Depth (m)3514
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003515Metagenome / Metatranscriptome482Y
F050302Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0208183_10885361F050302GGAMNVDSRIITLALFLIAQSVGAIWWASGLSSEVNRLSGLVDKSD
Ga0208183_10885362F003515N/AMGTAHAGPPEGMVRQMIPFPAMCLPATAAKNHFATLMGALIQDYGVHISMTFSSNPDQSQRVVIIENPHSGLAGVLMITDEQTCIAFSGEDRKEFIRPPDHPMGELNMDTEA

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