Scaffold Ga0208183_1027821

Overview

Basic Information

• Taxon OID: 3300025274
• Scaffold ID: Ga0208183_1027821
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.47
  • Long. (^o): 11.53
  • Depth (m): 3514

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F045194	Metagenome	153	N
F103407	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208183_10278211	F103407	GGAGG	VSLLEKLAHMIGDRKVPIPAMPGFPRYRVSFANRHIVKVILFTVLVSLAAVGTGMYFTIKDVVNATYNWPDPAIYDVTEEGLQMMGTKNPKLEDGSESQTLSIRLGDGIRISTLRIKDSDVGRTGITRSLDISPYT
Ga0208183_10278212	F045194	N/A	MAEEEEDQKPDKIEPNRVQMTSGDIVRLIIAAPVVFTWLFLGSRIIISATNSETVLNNVEPLLTVLAVLTIPVTGILQSLFSVGGDKK
Ga0208183_10278213	F001034	N/A	MQASQQVYEDAQYQSTTPIGPQAPIPPGVHDIELSWDRKRGYMRVIIDGKTWHFKEYLGKAQVLSCDSKRGRLNLRAIAQINGETLTMWRDPDAPPHAEVEGVRREKTHNRLCYRRMTEEWRLRDERLAWNHPDALVFTKSYVGDLNAEWHANDSIAHIYHNGYAIIDKDDVAHLYE