Scaffold Ga0208183_1018562

Overview

Basic Information

• Taxon OID: 3300025274
• Scaffold ID: Ga0208183_1018562
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1602
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.47
  • Long. (^o): 11.53
  • Depth (m): 3514

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F068933	Metagenome	124	N
F103880	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208183_10185621	F103880	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSVTINGLQNGSTATTVANALGLVNPLEIDVGGIPQIRVRLTDMYAMDMLWLQHNPLTKISAGDNQEWIVNQIVYP
Ga0208183_10185622	F033842	AGGAG	MQILKDLTSPTKLISKLSLGMKGAAGAAAATVALEAGTQLLERFVLDPHLPQVANMMNTVVTNNAPGLGTVDVRDAIVLLPAEQQTYKALSSGNKQAHIINALASYGTKIVLRRTGLNPKEIADKAEKVITPRTMLPSVI
Ga0208183_10185623	F068933	GAGG	MSKLDLLNKLHWELLMPKKMPGMKGTIGRPSDLIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD