Scaffold Ga0208183_1015712

Overview

Basic Information

• Taxon OID: 3300025274
• Scaffold ID: Ga0208183_1015712
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1780
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.47
  • Long. (^o): 11.53
  • Depth (m): 3514

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009425	Metagenome / Metatranscriptome	318	Y
F022755	Metagenome	213	N
F043620	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208183_10157121	F022755	N/A	MMATNGTTAQTKKGFRIPDQTAHITFSGTDYDGAEIWVKLNVSFAHYIALREAAEGDDQAKMAELFGSEVLMEWNLEDASGEPVPATGDGMLQIPLSLAMLIVQHWIEAVSAV
Ga0208183_10157123	F009425	GAGG	MDRGLVIHFKMDRPRDHWREVSCKEIGCVNYAMGWKTILPAGDTANIEMIRRSNMGFREEREDGLIIFTFTPGQECFTGQGGGHRVALERDPIMTQDSRILEPLNFMDNYNDHMYRRSVNHG
Ga0208183_10157125	F043620	GGTGG	MRLLAMIVLAGMVAIVVSVLMLGWLYEVPRRLVRLAACYIGFHGRETWGVNPVNQNSEPYCRDCQRFLVKVY