Scaffold Ga0208813_1049398

Overview

Basic Information

• Taxon OID: 3300025270
• Scaffold ID: Ga0208813_1049398
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 931
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045194	Metagenome	153	N
F058441	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208813_10493981	F058441	GGAGG	VSLLEKLAHIIGDRKVPVPAMPGVSVPRVSFGSKATLKIIFFTVLVSLGAVGTGMYFTIRDVVNASWDWPDSGAAYYASEEGLGTMGQKLPLNEDGTESQTLEIRMADGSRMESLTAVLEMGKASVDCMAVERAAGTGYLWVDTFTMNELVAPTLTMNASF
Ga0208813_10493982	F045194	GAG	MAEEEEQKLDKQEPNRVQMTSGDIVRLIIAAPVVFTWLFLGSRIIISATNSETVLNNVEPLLTVLAVLTIPVTGILQSLFSVGGDKK