NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208813_1029321

Scaffold Ga0208813_1029321


Overview

Basic Information
Taxon OID3300025270 Open in IMG/M
Scaffold IDGa0208813_1029321 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1309
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.49Long. (o)7.9Alt. (m)Depth (m)2455
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099120Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208813_10293212F099120N/AMAERYDPYGTLAGVLPKDSFLRPEFQARDLDELLDSLLIFDDIIPKQTVDATTFQYQIETTGAGDGTRGSAGTDVKKEYAPLRADGSEFSYVSVSPLEMAVGVLQARGVAFKLTEAARHDHERLKIDPLARTRRRVAYWLAEQINAEMVATMTNDFSITNSDDTGMEDIMSHSTDFGTETTVGHLAGTLDSTYYWDEADANPIRDILDLQTVFEDQDGYNYSMTDVYMRFRDLHLLSTFCTEIGADWVRDPLGGFQASNVAGITFHGLKNVAGFPTTAGDGYIMALDRNNPVGQTYQSFSSEFPAANNMSFHSYMDDATHDFHYQMFYTRGTVVVEPLSLAVLRVRD

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