Scaffold Ga0208813_1011621

Overview

Basic Information

• Taxon OID: 3300025270
• Scaffold ID: Ga0208813_1011621
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2488
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208813_10116211	F025299	AGAAG	MIVEEIPYFVEFIILGIVLGFGYGFTKLFLNHAKDKSKIRRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMFGKPILKKILNTVDKFGV
Ga0208813_10116213	F008596	GGAG	MSGAWDIATATSLGTGVAKTQINGGANLTKPTQAVNLVEVVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTLINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDVTQSATTRFIMGVGYTKQG
Ga0208813_10116214	F003270	N/A	LAFWQQLSEKDYQVLNADVNYASLDYLGKLKVASNILTGSLTGRVLFSDQYNPSPSGQPRINPAGIANKWVGIGVLGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNVMVQNRSQTNRAFATAQRNRSFVPLDSFDYSTGSAFR