Scaffold Ga0208813_1009335

Overview

Basic Information

• Taxon OID: 3300025270
• Scaffold ID: Ga0208813_1009335
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2910
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F002744	Metagenome / Metatranscriptome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208813_10093351	F002744	N/A	IQSDDVAVEPKKFVLPNINTGDASFTSVAAPALLAYSINTPLAGGEHLNFYGQALVANTVAPGVGATVLYDTVSTNGAEQYYTRPTNETAAATAINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHTVGYSEFISPDFNTSMPYRIAVQPTATGLGSNANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARAGGADNFINFVRYSKN
Ga0208813_10093352	F000704	N/A	VAKMPHENGDIQPSQVKSQPVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTSGSNQPLDSFPFVYSDTDDGLLLNEGNNTIYNQTYTLDPDMTAILYKISLNFCAVLTVSAYTSGNFNIGALHIKITERSTNDSLLYENTFQSGAANLSATGTSMHWFTQDIVETIKVRKGNPIDIQLDLITTTGSGTRQEGYAPLAPYQKTAVLKAFTPTGISLHLHPDLSHADGVFKYKKDRVSLLGQ