Scaffold Ga0208813_1005710

Overview

Basic Information

• Taxon OID: 3300025270
• Scaffold ID: Ga0208813_1005710
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4167
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011291	Metagenome / Metatranscriptome	292	Y
F012032	Metagenome / Metatranscriptome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208813_10057101	F012032	N/A	FSCKWLKNNGQEGKVKRAILGRYAWRFTHDPQANKENFQEHNDYVLAFRVGSGLLPEHTRWVNINPNTVFEVNRVAV
Ga0208813_100571010	F011291	N/A	ECHAYVVEKYEAPGTWTGSHQNKAGVTLNRPPMGIRITWSKRGNTQYKPKKMSAEEKKLQRELYDSITPEVIADLGPNEMLAKVRKNYGPNPDAKGYNEFPGRKNEKNL