NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208568_1050123

Scaffold Ga0208568_1050123


Overview

Basic Information
Taxon OID3300025269 Open in IMG/M
Scaffold IDGa0208568_1050123 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP2969 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)563
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth of Funchal, North Atlantic Ocean
CoordinatesLat. (o)32.08Long. (o)-17.26Alt. (m)Depth (m)4002.6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005464Metagenome / Metatranscriptome400Y
F099450Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208568_10501231F099450N/AEVSGDTIWAAIVMTWNPVVRTIDKEFASEVDCWNYYEGGTGESKFGSQVLDHQNNPPTKDFHFGPDYLEYPIRTYRGKDGQGSVWLTCDIKGRYKDL
Ga0208568_10501232F005464N/AMNIKSKDMYLKVAGWALSLLCMSAGTYFLWPHIHVALLGIVFFYLGIRIFNFSTFEEYKEDRVKLLLKLSKW

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