Scaffold Ga0207894_1068578

Overview

Basic Information

• Taxon OID: 3300025268
• Scaffold ID: Ga0207894_1068578
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 608
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 14.5287
  • Long. (^o): -118.7737

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026922	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207894_10685782	F026922	AGAAG	MKNKKQFLPIKTKDVKRYIGYYENWYNTFDKDGYKYVIEQLSCDHNIDDKYYNNVLSSLHNFIKGGKFYRIEITK