Scaffold Ga0207894_1011458

Overview

Basic Information

• Taxon OID: 3300025268
• Scaffold ID: Ga0207894_1011458
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1675
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 14.5287
  • Long. (^o): -118.7737

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088726	Metagenome	109	Y
F099127	Metagenome	103	N
F103082	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207894_10114582	F103082	N/A	MKNPTATRKKKRPTVKQLAGDVESLWSGMMYLDKNIMTMQRFFEEYLVMKNDVEKFMEHFEGRIEDAKKSKEHTEG
Ga0207894_10114583	F088726	GGAGG	MSKQDVIGHALIKFSEAEIDLILTALYNTEKLNIPRVKSKWKRPYTNLIKELLHIKETLEKEKEKQQ
Ga0207894_10114585	F099127	AGGA	LTDSPAYYDLSGDSGGGKLPAGNYEAIIVDMSTVTDIKCGVFIADVFKPVYRVTAGDHKNMEVTDNGIFRYKQVDGYEYESNKNWGFAKFMQMLGMYSKKDGKVNLPYITKNDVSQKQVRIMVWDKSFINETNDSISYPVARAVSLINEVPF