Basic Information | |
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Taxon OID | 3300025268 Open in IMG/M |
Scaffold ID | Ga0207894_1000084 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36356 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (59.38%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 14.5287 | Long. (o) | -118.7737 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F096029 | Metagenome | 105 | N |
F099132 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207894_100008421 | F099132 | AGG | MNKLNIIASIVEGETLCNFNGLMEDLEFKKLLKAVINLPLEEATSQLINKANEIS |
Ga0207894_100008441 | F096029 | N/A | MKERIKKVIDKCKKEGTYINEHGTTTVKATSKLKFFTEEFAGELGIKTYIMTYDDCYIGKAEIVGPDGTVATGHAKVFRNNKPKAMELAESFAISRALSIFGILDESITSKEELDDLNIPNTRVDQSAEVINYPKKKVTSVKSVIRNIDAAMHLSRLKYLKDVEFKNEFNDAIKNHPATYKDLMNHYENRKIKLQTGAK |
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