NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1024757

Scaffold Ga0208179_1024757


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1024757 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1584
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008778Metagenome / Metatranscriptome328Y
F051056Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_10247572F008778GAGGLSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGSPVLAFWLTGRVSAFETLGDIGSRTTVMIRAYFRMQDSPDVRESIEEEVWDAMYQIDSQLRSDADLGGNVSDSSVGAATVGYTNMSGGVFRTVSVPYEMELLGEVTITP
Ga0208179_10247573F051056N/AMATPTTTFKLKGPMFEKPTQISLGFAEAVNRGLLDLATIEGSNKVKEDLYPGHGRVTGNLRSHIGASKVRDYLVQIDAGEGRYGENLIYSGWVEGISERNKTSVFKGYGMFQNAYDHINNNPKLYEDYIGDALIEAFD

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