Scaffold Ga0208179_1018477

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1018477
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1966
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008151	Metagenome / Metatranscriptome	338	Y
F080507	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10184771	F080507	AGGAG	LDTKELRSQAGALLDQAQTAMDQGEMDTFRRLVDEAQVTMTKADEIDAAASQVRKLRGEFNQPLNAIPVTSSDVAIYNAMDTTARIKSDYRPASWVKGLPAMAQPLWVQDLCGD
Ga0208179_10184773	F008151	N/A	QAMTRMSKKTVDAINATGLAGTLEWSEQLPFVQSVLVQAPARAAIIHRTTNRAIQRGVTIALENGYSIAQLARGVPTADPPFPGLRAILTETENRSRLIARTEVMRSQNQTSVGFFKEQGFSYVRADDIDGDPDDNYIDPGDPYGRTCAERHNQIYTVEDAANIDDHPNGTLNWQPMPRNYKPEETA