Scaffold Ga0208179_1011958

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1011958
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2723
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001136	Metagenome / Metatranscriptome	767	Y
F008153	Metagenome	338	Y
F012880	Metagenome	276	Y
F071310	Metagenome	122	Y
F077392	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10119581	F077392	N/A	VYILVGGLEDNKVKLFHGASTEDLGQRTADQVPGLYEGRLADLDLCQVLSNSQTP
Ga0208179_10119582	F001136	AGAAGG	MVVDDTIAQALVRIADAIEENGETLKRIANHYDGVVPVMTRNANRAEALAKEADQSFGQQVRDIFRPVEN
Ga0208179_10119585	F008153	N/A	MGLCLDWLFQIGVIINMPKKELITVNNVNIQPLMESLVELVKDKKLTGELDDLISAKIPEKSSADWKLICGVLCNSVVEWVAMNKNEEVQSTDLLNHLQSDIGYIMKRLGLS
Ga0208179_10119586	F012880	GGAG	MKFNIVTLIWSIALMLLTFQICLLWIDWQFTNTIVYKFMLLLDGFMFGLVISDWSNN
Ga0208179_10119587	F071310	N/A	HRGILGLNKKVDGQPKEHSDYVLVYKIGNGYGTRRRWGNVNPNTVIQINGVAV