Scaffold Ga0208179_1011603

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1011603
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2788
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003827	Metagenome / Metatranscriptome	466	Y
F017842	Metagenome / Metatranscriptome	238	Y
F021121	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10116033	F021121	GGTGG	MADFEPYSDEVCAEAIKSFQERLMEADNLMKDKNGKIDYEICWKAMRKEGPMILNVAKHLFSMHINRHHRKEA
Ga0208179_10116035	F003827	GAGG	MAEGRWADWQVRQIAENMAEKCPKRDWFGGDDANYLTSLKSWSHICARQLFSMELEERQLIIFIHHLGIEHVGVQTFDPQDTRLHSDYVPSEGDAYNAPPLDIKPK
Ga0208179_10116038	F017842	GGA	MPTYSMKDPDGVEHEFMCSIAEMQAKKVIGWTMVFCPAKNNLIGHTGDIISHTDQGWRDTLRRIKDNSPGSDMDTG