Scaffold Ga0208179_1010521

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1010521
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2995
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F003706	Metagenome	473	N
F019729	Metagenome / Metatranscriptome	228	Y
F100970	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10105213	F100970	N/A	MTKIQKVILNHYKKICGPEMAARIIGNHENNFRIFLGVVEKKLESRKPRENYDGREEEAG
Ga0208179_10105214	F019729	N/A	MKHLKDINMSWSIHLWYAMTLAMRLFLLSLTALVHGMFPFIFISTVSDGVNQLKNDLDQRNHT
Ga0208179_10105215	F003706	GAGG	MSEVSDVEIGKLIQKVESLEVMVRGQNDRLDKLDKQLERTRGIGIGVVLATVGLSGIGGSLFTRWLSG
Ga0208179_10105216	F003515	AGG	MKKILTGIAAAMFCFMLYEVKAGPPEGMERQMIQFPAVCLPATVAENHFSVLVGALINDYGVHISMTFSASPDKSKRVAIIENPHSGLVGVLMVSNDQTCIAFSGEDRQVFVRPPDHPIGKMNEDTET