Basic Information | |
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Taxon OID | 3300025267 Open in IMG/M |
Scaffold ID | Ga0208179_1010521 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2995 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 38.55 | Long. (o) | 13.18 | Alt. (m) | Depth (m) | 3511 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003515 | Metagenome / Metatranscriptome | 482 | Y |
F003706 | Metagenome | 473 | N |
F019729 | Metagenome / Metatranscriptome | 228 | Y |
F100970 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208179_10105213 | F100970 | N/A | MTKIQKVILNHYKKICGPEMAARIIGNHENNFRIFLGVVEKKLESRKPRENYDGREEEAG |
Ga0208179_10105214 | F019729 | N/A | MKHLKDINMSWSIHLWYAMTLAMRLFLLSLTALVHGMFPFIFISTVSDGVNQLKNDLDQRNHT |
Ga0208179_10105215 | F003706 | GAGG | MSEVSDVEIGKLIQKVESLEVMVRGQNDRLDKLDKQLERTRGIGIGVVLATVGLSGIGGSLFTRWLSG |
Ga0208179_10105216 | F003515 | AGG | MKKILTGIAAAMFCFMLYEVKAGPPEGMERQMIQFPAVCLPATVAENHFSVLVGALINDYGVHISMTFSASPDKSKRVAIIENPHSGLVGVLMVSNDQTCIAFSGEDRQVFVRPPDHPIGKMNEDTET |
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