Scaffold Ga0208179_1009230

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1009230
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3300
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013899	Metagenome / Metatranscriptome	267	Y
F018553	Metagenome / Metatranscriptome	234	Y
F022673	Metagenome	213	Y
F031898	Metagenome	181	Y
F043989	Metagenome	155	Y
F072444	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100923013	F013899	N/A	LSAAINNMFPDTSEIEEGEKGQFELFQSGVSFMKAGHGKFFDLEDVKKKLTESGQDLFTN
Ga0208179_10092302	F031898	AGGAG	MESTVLEDFQEEISEMDRDDIRLKTIREWEKYRERKNLGIRNHPESCMEKMLEDDQVHGI
Ga0208179_10092303	F022673	N/A	MKKEQIVSPRVEIAEKIHEELLVSLELERKLLKKELTLQETMSERVMVRKDLANCERKIKDLTEQLQKENDRSKATKWNQQS
Ga0208179_10092304	F072444	N/A	MPERENNAFWEIAEIIDREMSILRKMRPVGPKEKALLKKMVEDKEKEHEKRTNSQP
Ga0208179_10092306	F018553	AGG	MLCIPRLRIAILNEEIALWENRLRDNPDDIPYLGYIRTTLKGRVKELEENERLDQEKDEGIKRK
Ga0208179_10092309	F043989	N/A	MIKYGIYIIIIWSLFESSCSSGKGNLPYHPPVFVPMYREECYSDHKNFLCMDKEKEASYTSPFIYFLFMSEMK