Scaffold Ga0208179_1008062

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1008062
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3652
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013467	Metagenome	271	Y
F020463	Metagenome / Metatranscriptome	224	Y
F036024	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10080621	F020463	N/A	MYIILSQTPDRDGFQGQVALNTNRINGFREVSYKDIGGNSQKDKAGYVGTYTEVLMKGATVLVADPISSILEKINESSVSGGRVSTLAQN
Ga0208179_10080625	F036024	AGGA	MGMTTEYSMSRIGDEDTFLKLDKATKMCQAKIAEYISEVKYEDGNEAIDDYAWHIVTPERFEKDWENDDRLKKTDEIKTRYKNLVKNNRVLFFEVDWN
Ga0208179_10080626	F013467	N/A	MTFEELKNWVWCEKCLEWKDANEVCFIGIEEDGFGKDVLHFLCDKCDLENKNNIISSATKPRG