Scaffold Ga0208179_1004390

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1004390
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5647
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F062151	Metagenome / Metatranscriptome	131	Y
F064804	Metagenome	128	Y
F093997	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100439011	F093997	N/A	ALETPTDLPLSPKGTAASDDVGAKVTVPKDPYPQGVQAGLDDDRNGEGKPASDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPSAALENVDKSIKDTSLILKDARAEGFEGLSNVARNILNGKYYVPSDDEVRGF
Ga0208179_10043903	F062151	GAG	MGTAIYDAADTVISLINDNWTAGRLPNIQKAWTKRSVGFGDSRSPQIILTPKTENVQYFGLYGSDFWHDVTLDLDIRSYQNDVRHNNIVKEVQRIIKANIRGGNDYTDIRVVSSYSRSHYMRNMFNHIITVSLRKLNP
Ga0208179_10043906	F005948	GAG	MIPMVELNHNVVSFNSDTLIKGSHGVLVNVYVSKVGSGSNKVQFRNGTTASAPVEFTIFTAAQGTYVGINRRFEAGIFADCDGSAEVTAVFK
Ga0208179_10043908	F064804	N/A	MVQIYHADKLAKARDLVIIFLFGSILIETITGIELLGSWWK