Scaffold Ga0208179_1003583

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1003583
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6526
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001992	Metagenome	607	Y
F002744	Metagenome / Metatranscriptome	533	Y
F022118	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10035831	F002744	N/A	PKKFVLPNINTGDASFTSVAAPALLAYSINTPLAGGEHLNFYGQALVANTVAPGVGATVLYDTVSTNGAEQYYTRPTNETAAATAINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHTVGYSEFISPDFNTSMPYRIAVQPTATGLGSNANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARAGGADNFINFVRYSKN
Ga0208179_100358313	F022118	N/A	HRQYMITIPDFKCSKQSSHGREERIEFIISEVKKHPDFHFEGPAYTKEKCSDLASVDDLINLCLRMMHYAPQTRKDITEQILMELKII
Ga0208179_10035834	F001992	AGG	MVVQKLLLQEGLKRTKQYSVSVLGYDFLGLAMRLGLFLTVGVLIQAYFTATIQGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGYNGIAFWQILQVTAILLVIVEYMQYDRMLKEKGEKPNATSQAVFLIIAIALSLMVFPQTIQKIKEMRILQQ