Scaffold Ga0208179_1002988

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1002988
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7409
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039677	Metagenome	163	Y
F075976	Metagenome	118	N
F103083	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100298810	F075976	N/A	MQMKQLFESWNKYLANNRWKYHILNETAFSRIVTDYGERGYVILTSDRSCEAELGLPAGKECSDEEIAIQDKANKENMKQFLSDIRTTGFGYIPTLGGYKEDLIDPETGEPVRDEEGEIVKVDTDRPENSVIVVARPEQRAGHEELKSFGMLLADKYNQDSFFYKPPNDVDEGAYWIKPDGSVDMKFDTFTVNDLKQQFYTQMKRGPRHRFTALDENKEMVFRVRVAPGSTDRARKRYGEIFMKFSE
Ga0208179_100298816	F039677	GAGG	VNIGDLVKYCADPNDGRLGIVISEVFDMRPQWLDVYPAVEVRTKHAHTGEEGVWMWMLDDIEVVSSVDGTI
Ga0208179_10029883	F103083	N/A	MTDRQPKKGDLVSYQTSQLDILGPRQGALGIVVGGPDQHGKVEVEWFKKFSLDKLFRWNSVENLRTESSYRCRIEPAPKSYESPAFLEPEEGEEFKNDELF