Scaffold Ga0208179_1002739

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1002739
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7839
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007771	Metagenome / Metatranscriptome	345	Y
F010477	Metagenome / Metatranscriptome	303	Y
F048371	Metagenome	148	Y
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100273910	F048371	N/A	MVMDFRKVIGVMFLTFIIFSYLSFRAEWNWFMWIHMIQFFRYIELPHDYWVFLDRYVFNGAL
Ga0208179_100273916	F007771	N/A	VETIIYAKNIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTKITNPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRALAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSEDDYYRSPHEVEAHGKEKWLQLGYTATWNKIEEKNG
Ga0208179_100273917	F010477	GGA	MKLRYMIFVPYLIFIGIMGGNVLVDAIVIGLALAMYDFFFGNGGGGGRPA
Ga0208179_100273918	F069325	N/A	CYKSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNRTWMLHRPPVMFGKSKKVTKGLTALTDKQFGTT