Scaffold Ga0208179_1002041

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1002041
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9677
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013898	Metagenome	267	Y
F041261	Metagenome	160	Y
F062841	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100204112	F062841	GGAG	MNKLIKCVVIMVMIMIPVNVIARMYPSNITMPSVCFSEPRELYIYQEMILGETIVAVAKTIKTAKPEDQGWIVIFYSKEKDSWSLAGIVASEACVMMVGHGWDNIPLENFPPGYKEYQEGPKVPEPIVPKVSNDDALEGKL
Ga0208179_100204113	F041261	GGA	MSKKIHDCPCDPCHNRSKCGREALECKAVKNYYNTGWYTKELIGVKLKPMKVRR
Ga0208179_10020415	F013898	N/A	MEDTRQLFECDGCGAEYSLQTDMDMVAEFCPFCSEPIDEIDWEYDDENTKQESEGS