Scaffold Ga0208179

Basic Information
Taxon OID	3300025267 Open in IMG/M
Scaffold ID	Ga0208179_1001284 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025267 Open in IMG/M

Scaffold ID

Ga0208179_1001284 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13184
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (27.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13184

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (27.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.55	Long. (^o)	13.18	Alt. (m)	Depth (m)	3511
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

38.55

Long. (^o)

13.18

Alt. (m)

Depth (m)

3511

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F029898	Metagenome	187	N
F033643	Metagenome / Metatranscriptome	177	Y
F047104	Metagenome / Metatranscriptome	150	Y
F054936	Metagenome	139	N
F070553	Metagenome / Metatranscriptome	123	N
F096037	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100128411	F007550	GGA	MKKLILLFLFVCSVSINAASLKIVPVQQKTLPNGNAYGLASGIYFELTNLEPFIMYKLQYSEDLTKWTDLVHLGTYKMAMTSPYWTWDELPPHKCFFRIVVAW
Ga0208179_100128418	F054936	N/A	MRPEEHYYKTPRALRKSGGTKGGVSAAKAAESWEDCDAMPHFTYDKGWWAETKRQVDESYAKLKAKGFFDSTSDYWAKRRKTDPRCQ
Ga0208179_100128422	F096037	N/A	MKTTVYAWGAEKNNVLHVYAGMTTQKDIGTRLSNVSDIAVGTTESWFGGPEASRLGAYNLDLIYTDSTQNYSRHKEQRAINAAWAVEEKYRNVSLPVRSLNSNRAVGLASVQKYLDRTTSVYGHVLLHDTELDGNFNSGVFRAIESWIKGKVQDSTILKRKFEKALIAKQQKQALIANITKVLGLEPVLA
Ga0208179_100128425	F033643	N/A	MDDKTMFSASEIYPGFNIIFANGWEISVQWGRCHYCANRDNPDEKSRQSRTAEVAIFAPDKDGFPRDWWSYDEDLNEVVEQPEDTYVNGHLTTDQVANIIAIISKKSA
Ga0208179_100128426	F029898	N/A	VGQMGYTIDSVMRKIIEMIKKAIKKNPVRTQELTYQREYDGAVKNYFVNIFEDWADYYVAYTYDKHGANCGVKRFNKGNIQKMKPSKRNFALVIA
Ga0208179_10012844	F070553	GGA	MLDNFDAVAKLIEMNKQFRKILKELVANGFNIKQTQKGFRIAPPKSCTNQRVYFTHGGEACLHPIRRDFVKEYGYRINFKK
Ga0208179_10012846	F047104	GAG	MTMTEIQRYWKARRAREAKRDTFTLNGNTYEVSHDPKHQADQLAGYCGNNPK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208179_1001284

Overview

Ecosystem & Geography

Associated Families

Sequences