Scaffold Ga0208179_1000853

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1000853
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17354
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (28.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042023	Metagenome / Metatranscriptome	159	Y
F043614	Metagenome / Metatranscriptome	156	Y
F045140	Metagenome / Metatranscriptome	153	Y
F080506	Metagenome / Metatranscriptome	115	N
F087296	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100085311	F045140	GAGG	MIRLLTIFLLSASIAQSVSMKIKVAHQKATHMNQPYGSPGGIYFEIKDMDPLLPYWVQYSHDFKIWKDLYNFGSFGTNSTSPLFHWFELPPEKCFFRIIQKW
Ga0208179_100085314	F087296	N/A	MTALAEIKEEQEAVQYSEWVDKWQEIESDMMYNVPWKKLYERVGLSKSIGGRWTIAEGKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNKSIK
Ga0208179_100085316	F080506	N/A	MKLHEAVRIGKGLDFTTVRECVDSIHSFSPQLFPYSEINEELNELYEDYDNFKAHPETWMETLCGMKP
Ga0208179_10008532	F042023	N/A	MKHMSLEKRVFLCFLILILFLSSGCHTTKYEWFPNKDGTDLDVNKVALPDRAELGGIEIDVLKITL
Ga0208179_10008538	F043614	N/A	MKNITLTFERKSNTVWSDGDDYYATYVHEPTKSKWKILWQYSQCGEHIGSIQKLVTTGSPTSQGGERITWEYQGEVFRFKKLEQGLKVEIDLLESDETYESVSRALATPPPSLESEPQEERVSFEPEMPNLRENPLGWA