Scaffold Ga0208179_1000543

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1000543
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23671
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (96.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041251	Metagenome / Metatranscriptome	160	Y
F071313	Metagenome	122	N
F093989	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10005432	F041251	AGG	MKGYKIQDITEIAEAIKSGDPAENNIGTVKDGFFWFPEEMQWAAQWQKDKEQDSPDGYFAMLLDPDIFVDEDDDDEIMAGIEYWWHRSQIYSAAYLINNKPLVTSRYTEDIANDSLRDLLKMQNEVKESFADQGMEVGANANPKDIWMVIRTTAQHIHNNVRGIH
Ga0208179_10005433	F071313	GAGG	LKQTENFCILPNSLLPAMSELSKGEIRALIGVLSFRDPNSTNLAFPSINTIAKRCGMTPSYCSKQLNRIAERGGILKINRRFNNSNTYEFIWTGCTPPVEGVREPPVHVPLPNRPSNRPLSIGEFLRLYPKPSPPSGWQSYIWANATKEWKDKGLEEIKDQIYLDIRDRVQREWRDVEYWPNPATYLKQQWWKQPMEGRTTTDRETSDTRYF
Ga0208179_10005437	F093989	AGGAG	MAGKQFDNTNKGRFFLNERKTAKDPALSGPGNYNGTDMRVAAWINPNEDADNNKVWKAFDYLAENAVINMRFSEPKKKGGGQSSGSSDMDDDLPF