Scaffold Ga0208032_1016757

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1016757
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2209
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045855	Metagenome	152	N
F059448	Metagenome	134	N
F066148	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10167572	F045855	GGAG	MNQTSKARINITQRMLNKSIIDANKSVVAFVRNCYPTLGYDFIDNGCKNTLVAYYDDGHAYTPTSIRLYRRPRGDKLLSVQGMTVRAKAGDVMTFEHDRESNRIIVRLELGEPPKEIILI
Ga0208032_10167575	F059448	AGGAG	MTDTGFKTIIKVIAKGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVISEWVHGQRVWGVINCT
Ga0208032_10167577	F066148	N/A	ADGIIEACPKQLNPDDMSTLIAFMVWSYGMQDDWDDMLPKIVRCINLDDGHARIVRVANRDANKFMDKVLGDISNARRS