Scaffold Ga0208032_1010768

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1010768
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2945
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F019909	Metagenome / Metatranscriptome	227	Y
F020259	Metagenome	225	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10107682	F009699	N/A	MMTNKQALAFMQKVDSSAPFWKELHDENRPTMNIQGTPTPRCLYNLMLTRRDVNLYAKIDMKPHRGWKIGDVKAYFGLKGGKQKIADAINAIHDELIGRLEKENNDDD
Ga0208032_10107684	F020259	N/A	MTEQTFTAVADWAERIQTMAQENSLINAQDIVHDVFGMLRDDEHFLPRL
Ga0208032_10107686	F019909	N/A	MTNFEQHIGQELPQAILAHLNNSSIEMLTKQAEKLKFDSWCPVSMEGDSPELRKQLKESSDLLFQWIGFQSVTK