Scaffold Ga0208032_1006435

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1006435
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4056
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006199	Metagenome	379	Y
F021188	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_100643510	F021188	AGGA	MPDTEELEIIWIPEEEAKYNLTVENEQGVNELVDLPASTVDRICKKKFGHTNWARMGAIFPEELTRNPHEIDYLEGIVYFKHERIV
Ga0208032_100643511	F006199	N/A	TPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFHKNVEDIILGVQPDKKQRMLSTDPYASQMKE