Scaffold Ga0208029_1061633

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1061633
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 755
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002426	Metagenome	560	Y
F042083	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10616331	F042083	N/A	ITGMAAGLSVAQYLNQGTKTGNGPVSGVISEAVGGNLQGAFTELSQNAIALSTSTTGRAVLSSAIVLATAGGLARKFFPSVKLGGTKLYFKI
Ga0208029_10616332	F002426	AGGAG	MSGLQTRTYTLAGSSLTAGTFTSISQLMGSSQSTTNPEGMNKVVRISLSCSPDHTSATDGVSVFKFAGDGVSVQQIFAGPSWSNQAAGPLDGNNGMPVVIENSAGIFDIIAGNQIDFSVSCTTAETVDVAVSITYAA