Scaffold Ga0208029_1051600

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1051600
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 861
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022311	Metagenome	215	Y
F032077	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10516002	F022311	AGGAG	MAKSLIDESYDPIYDQIRGILGEHFENYCFIVMDEKGELFYDYNHLPAGRMLLHEMQLEIGDDNIEIEWEFESDPDDPEDDAMD
Ga0208029_10516003	F032077	N/A	SIANNNPQRWLAAASMFLAGSSMHDVKKELDMHHYIARRINGIVKTCDEARVFRQERAMQLASTIDEISSIGEKIASSYLDGSAEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNVQKIEVRHITTPEEAMSLIDSLPEAEVIDVGEDG