Scaffold Ga0208029_1035238

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1035238
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038713	Metagenome	165	Y
F074146	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10352382	F074146	AGGAG	MISRGYRITEFRDKWKTIYSKTFLNKYIPIHEDVWVDDKEFIETMKKPEGEQYIWTVLEENGTWIVTSGYHLVNRIGFIITKNKWEHNMNIEVKGY
Ga0208029_10352384	F038713	GAG	MIFVKFTIDNGGIEYLDYAWFKDYGLAHYENGESITDKDIIRDVYGEGRSDHDFEENFNEETKVYTDYDDDTIAVHRVQEMTQKELDVLVKMGVLYK