Scaffold Ga0208029_1017595

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1017595
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1836
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F036003	Metagenome	171	N
F062259	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10175953	F012529	GGAG	MLEDKTYKIKVAEYHDAVIYVYERHRKCLNPKDETENHKWKHWKEVVTVIPVAHYDGDDYQDASGRFHTNIRVVVDALTELYGSSPDYEMGISYTMNTHQYINV
Ga0208029_10175955	F036003	AGGAG	MNTRMFNYKDKSVMFINCSLKHCYNTADYMIKRDKNNGYWKPRLYDDYDQDHSSVESIYDWIEIKDSVTDLSPITTDEIERAYNEI
Ga0208029_10175956	F062259	AGGAG	MKTEKELDSEVREAFDRAVDSIMFDYMYMGTEKGDDLEYMMFKHIETREYIKIPKCGVAFIKRKEIV