NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208029_1017595

Scaffold Ga0208029_1017595


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1017595 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1836
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012529Metagenome / Metatranscriptome280Y
F036003Metagenome171N
F062259Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0208029_10175953F012529GGAGMLEDKTYKIKVAEYHDAVIYVYERHRKCLNPKDETENHKWKHWKEVVTVIPVAHYDGDDYQDASGRFHTNIRVVVDALTELYGSSPDYEMGISYTMNTHQYINV
Ga0208029_10175955F036003AGGAGMNTRMFNYKDKSVMFINCSLKHCYNTADYMIKRDKNNGYWKPRLYDDYDQDHSSVESIYDWIEIKDSVTDLSPITTDEIERAYNEI
Ga0208029_10175956F062259AGGAGMKTEKELDSEVREAFDRAVDSIMFDYMYMGTEKGDDLEYMMFKHIETREYIKIPKCGVAFIKRKEIV

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