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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025264 Open in IMG/M |
| Scaffold ID | Ga0208029_1016781 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1895 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 39.48 | Long. (o) | 6.37 | Alt. (m) | Depth (m) | 2851 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001034 | Metagenome / Metatranscriptome | 798 | Y |
| F045194 | Metagenome | 153 | N |
| F059367 | Metagenome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208029_10167811 | F001034 | N/A | LASQQTYEDAQYQSSDPIGYQPPIPAGIHDIELSWDRKRGYMRIIIDGKTWHFKEFLGRAQILGTDSKRGRINLRAMARIDGETLTTYRDPSAQPHPEVEGERRESTHNRLCYRRQSQEWRLRDERMPWNHPEALRFTKNYVGDLNAEWHMADSIAHIYHNGTAIIDSENVAHLYE |
| Ga0208029_10167812 | F045194 | N/A | MAEEEKEQKPERRDENRVQMTSQDIVRLIIAAPVIFTWLFLGSRIIISATNSEAVLNNIEPLLTVLSILTIPCVGILQSLFSNGGDKK |
| Ga0208029_10167813 | F059367 | GGAGG | MTLFEKLAHLVGHRKVPIPAMPGLSVPRISFGSRATLKVIFFTVLVSLGAVGTGMYFTIRDVVHSSWNWPDSGAAYYASEDGLGTMGQQLPLNEDGTESQTLEIRMADGSRMESLTAVLEMGKASVDCMAVERAAGTGYLWVDTFTMDQLVAPTLTMNASFIHKLTLSGNVDGHHVGPTQNSAGAPDITVESTRGAGIYNAAGTVDRLLISLAGDAYIKDISITGHCSTGPIDLDFIKAGNFNLTNVEIGDDGNINTVAVDIGSDTVIHTLADTFVDKSIIVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |