Scaffold Ga0208029_1009620

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1009620
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2753
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002963	Metagenome / Metatranscriptome	517	Y
F017717	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10096203	F002963	N/A	MIDYNLIMWIGLGLIVGGFCLFLYSQMRLAQLDRELWKNEQLLKSFSKAKEKEKRDNK
Ga0208029_10096206	F017717	GAG	MFKLDPKAYKGNPTTELIANVVHELGHMFDVLSKSILKNKKDIIDLQTRIKDLENK