Scaffold Ga0208029_1006987

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1006987
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3420
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005821	Metagenome / Metatranscriptome	389	Y
F015531	Metagenome	254	N
F034711	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_100698710	F015531	GGA	MKKLEKMKKDKEIKAMYKVYKTAFKGEDSFNLYVKNLSEFFRITMDIYISGYTGVPKGCGKGPKGNGEWGRADAIKYWADKCNVKYRDINKYFYSVDEISPYS
Ga0208029_100698712	F034711	N/A	KDKKKYSSFYTYDNAYGPGFGFQWKDIPAAQTNLVHKRVTSNKTWTKLVQGYGALGITYKGHYTP
Ga0208029_10069877	F005821	AGAAG	MIKTLVIIILLFDGTVVKDEISFTPPIDMVACWNLADAHREIFSTHSWGKQHGAPNFRFDAMRQGWYLNDGRGTIQGHYCE