Scaffold Ga0208029_1003334

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1003334
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5683
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003161	Metagenome	504	N
F006641	Metagenome / Metatranscriptome	368	Y
F032044	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10033342	F003161	GAGG	MSRSGALDRIDVLLSTITDPPFTAVVRAEPLALSGTPVLAYWIQSRSNGWQTLGDIGSTTTIMVRAYFRLQASTDVRESIELALWDAMVEVDSKLRSDANLAGNCTDSTVGSATVATIDIGGQLYRTATIPFDIQLYEEVTITP
Ga0208029_10033345	F006641	AGGAGG	MAKTMCIQNFSDGAGIAYEAGVEYDVPAATLKANPNYFKQASRGSNKMAATTEDKSADEVETT
Ga0208029_10033348	F032044	N/A	LVEVLKTPELKAPRPARRAGILRRQLLEDREEETDAVVPKIQRHFRGLRNRVDGILGRYMERGGSESKEFPFDADMLMPPGEIPNLASILESAMMRMSKKTFAAINANGLAGTLDWSEKLPVVQSVLVQAPTRATMIHRTTNETIKRAVSMALRRGYSIEQLSRGVPDDKFPGLRSILTETENRSRLIARTEIMRTQNQTTVGFYKEQGFGFVRADDVDGDADDTYIDPGDPYRRTCAERHNQIYSLEDARNIDDHPNGTLNWQPMPRNYRPEETA