Scaffold Ga0208029_1002931

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1002931
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6283
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029112	Metagenome	189	Y
F068720	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_100293110	F068720	AGGA	MRKMSKGNLKLDVVEHIILRNMWEYYILATEDEDSIPNADIRYALVMGFEDEIGTVSMSEIKPHVISRTTDLNEIMPAAGYEWEKI
Ga0208029_10029313	F029112	AGAAGG	MNKQRNYATNHVSHKHLDAVTNQEDGTCTFKLDTIPKLGIRTVDVFQGKHRLFSMSISANGVCYQVLQHGQDTGCFTLWEDEA